J4_3CCV_007

3D structure

PDB id

3CCV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2616A

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCV_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0477

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

3CCV|1|0|G|1828
3CCV|1|0|A|1829
3CCV|1|0|C|1830
3CCV|1|0|U|1831
3CCV|1|0|G|1832
*
3CCV|1|0|C|1844
3CCV|1|0|A|1845
3CCV|1|0|U|1846
3CCV|1|0|A|1847
3CCV|1|0|G|1848
*
3CCV|1|0|U|1883
3CCV|1|0|G|1884
3CCV|1|0|A|1885
3CCV|1|0|A|1886
3CCV|1|0|U|1887
*
3CCV|1|0|A|2015
3CCV|1|0|U|2016
3CCV|1|0|U|2017
3CCV|1|0|A|2018
3CCV|1|0|A|2019
3CCV|1|0|C|2020

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae