J4_3CD6_001

3D structure

PDB id

3CD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

3CD6|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CD6_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0399

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

3CD6|1|0|C|239
3CD6|1|0|C|240
*
3CD6|1|0|G|379
3CD6|1|0|A|380
3CD6|1|0|G|381
3CD6|1|0|U|382
3CD6|1|0|A|383
3CD6|1|0|G|384
*
3CD6|1|0|C|405
3CD6|1|0|G|406
3CD6|1|0|A|407
3CD6|1|0|A|408
3CD6|1|0|U|409
3CD6|1|0|A|410
3CD6|1|0|A|411
3CD6|1|0|C|412
*
3CD6|1|0|G|428
3CD6|1|0|A|429
3CD6|1|0|A|430
3CD6|1|0|G|431

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain M

50S ribosomal protein L15e