J4_3CD6_008

3D structure

PDB id

3CD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3CD6|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CD6_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.053

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

3CD6|1|0|C|1889
3CD6|1|0|U|1890
3CD6|1|0|G|1891
*
3CD6|1|0|C|1946
3CD6|1|0|G|1947
*
3CD6|1|0|C|1965
3CD6|1|0|U|1966
3CD6|1|0|U|1967
3CD6|1|0|A|1968
3CD6|1|0|A|1969
3CD6|1|0|G|1970
3CD6|1|0|G|1971
3CD6|1|0|U|1972
3CD6|1|0|A|1973
3CD6|1|0|G|1974
*
3CD6|1|0|U|2008
3CD6|1|0|G|2009
3CD6|1|0|A|2010
3CD6|1|0|A|2011
3CD6|1|0|U|2012
3CD6|1|0|G|2013

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P