J4_3CF5_002
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAG*CGGAG*CGAGU*GGCGGCAUUAG
- Length
- 25 nucleotides
- Bulged bases
- 3CF5|1|X|U|666, 3CF5|1|X|U|667
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3CF5_002 not in the Motif Atlas
- Homologous match to J4_4WF9_003
- Geometric discrepancy: 0.2592
- The information below is about J4_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69347.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-F-F-cWW-F-F-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
3CF5|1|X|C|611
3CF5|1|X|G|612
3CF5|1|X|A|613
3CF5|1|X|G|614
*
3CF5|1|X|C|635
3CF5|1|X|G|636
3CF5|1|X|G|637
3CF5|1|X|A|638
3CF5|1|X|G|639
*
3CF5|1|X|C|646
3CF5|1|X|G|647
3CF5|1|X|A|648
3CF5|1|X|G|649
3CF5|1|X|U|650
*
3CF5|1|X|G|659
3CF5|1|X|G|660
3CF5|1|X|C|661
3CF5|1|X|G|662
3CF5|1|X|G|663
3CF5|1|X|C|664
3CF5|1|X|A|665
3CF5|1|X|U|666
3CF5|1|X|U|667
3CF5|1|X|A|668
3CF5|1|X|G|669
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain C
- 50S RIBOSOMAL PROTEIN L4
- Chain I
- 50S RIBOSOMAL PROTEIN L15
Coloring options: