J4_3CF5_003

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

3CF5|1|X|G|1284, 3CF5|1|X|A|1285, 3CF5|1|X|U|1286, 3CF5|1|X|A|1287, 3CF5|1|X|A|1288, 3CF5|1|X|C|1663, 3CF5|1|X|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CF5_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.0893

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

3CF5|1|X|C|1283
3CF5|1|X|G|1284
3CF5|1|X|A|1285
3CF5|1|X|U|1286
3CF5|1|X|A|1287
3CF5|1|X|A|1288
3CF5|1|X|A|1289
*
3CF5|1|X|U|1307
3CF5|1|X|C|1308
*
3CF5|1|X|G|1662
3CF5|1|X|C|1663
3CF5|1|X|G|1664
3CF5|1|X|C|1665
*
3CF5|1|X|G|1992
3CF5|1|X|G|1993

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain K

50S RIBOSOMAL PROTEIN L17

Chain P

50S RIBOSOMAL PROTEIN L22

Chain Y

50S RIBOSOMAL PROTEIN L32