J4_3CF5_007

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CF5_007 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0752

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3CF5|1|X|G|1763
3CF5|1|X|A|1764
3CF5|1|X|C|1765
3CF5|1|X|U|1766
3CF5|1|X|G|1767
*
3CF5|1|X|C|1779
3CF5|1|X|A|1780
3CF5|1|X|C|1781
3CF5|1|X|A|1782
3CF5|1|X|G|1783
*
3CF5|1|X|U|1819
3CF5|1|X|G|1820
3CF5|1|X|A|1821
3CF5|1|X|C|1822
*
3CF5|1|X|G|1958
3CF5|1|X|U|1959
3CF5|1|X|A|1960
3CF5|1|X|A|1961
3CF5|1|X|C|1962

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2