J4_3CF5_009

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CF5_009 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.0824

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

3CF5|1|X|G|2622
3CF5|1|X|A|2623
3CF5|1|X|G|2624
3CF5|1|X|U|2625
*
3CF5|1|X|A|2653
3CF5|1|X|A|2654
3CF5|1|X|C|2655
*
3CF5|1|X|G|2711
3CF5|1|X|G|2712
3CF5|1|X|A|2713
3CF5|1|X|A|2714
3CF5|1|X|C|2715
3CF5|1|X|G|2716
*
3CF5|1|X|C|2748
3CF5|1|X|A|2749
3CF5|1|X|G|2750
3CF5|1|X|C|2751

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain G

50S RIBOSOMAL PROTEIN L13

Chain H

50S RIBOSOMAL PROTEIN L14