J4_3CMA_008

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3CMA|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CMA_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0659

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

3CMA|1|0|C|1889
3CMA|1|0|U|1890
3CMA|1|0|G|1891
*
3CMA|1|0|C|1946
3CMA|1|0|G|1947
*
3CMA|1|0|C|1965
3CMA|1|0|U|1966
3CMA|1|0|U|1967
3CMA|1|0|A|1968
3CMA|1|0|A|1969
3CMA|1|0|G|1970
3CMA|1|0|G|1971
3CMA|1|0|U|1972
3CMA|1|0|A|1973
3CMA|1|0|G|1974
*
3CMA|1|0|U|2008
3CMA|1|0|G|2009
3CMA|1|0|A|2010
3CMA|1|0|A|2011
3CMA|1|0|U|2012
3CMA|1|0|G|2013

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P