J4_3CME_001

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

3CME|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CME_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0493

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

3CME|1|0|C|239
3CME|1|0|C|240
*
3CME|1|0|G|379
3CME|1|0|A|380
3CME|1|0|G|381
3CME|1|0|U|382
3CME|1|0|A|383
3CME|1|0|G|384
*
3CME|1|0|C|405
3CME|1|0|G|406
3CME|1|0|A|407
3CME|1|0|A|408
3CME|1|0|U|409
3CME|1|0|A|410
3CME|1|0|A|411
3CME|1|0|C|412
*
3CME|1|0|G|428
3CME|1|0|A|429
3CME|1|0|A|430
3CME|1|0|G|431

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain M

50S ribosomal protein L15e