J4_3CME_006

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CG*UC*GG*CG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CME_006 not in the Motif Atlas

Homologous match to J4_4V9F_006

Geometric discrepancy: 0.0873

The information below is about J4_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3CME|1|0|C|1551
3CME|1|0|G|1552
*
3CME|1|0|U|1569
3CME|1|0|C|1570
*
3CME|1|0|G|1627
3CME|1|0|G|1628
*
3CME|1|0|C|1633
3CME|1|0|G|1634

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e