J4_3CPW_008

3D structure

PDB id

3CPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the antibiotic LINEZOLID bound to the large ribosomal subunit of HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3CPW|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CPW_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0445

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

3CPW|1|0|C|1889
3CPW|1|0|U|1890
3CPW|1|0|G|1891
*
3CPW|1|0|C|1946
3CPW|1|0|G|1947
*
3CPW|1|0|C|1965
3CPW|1|0|U|1966
3CPW|1|0|U|1967
3CPW|1|0|A|1968
3CPW|1|0|A|1969
3CPW|1|0|G|1970
3CPW|1|0|G|1971
3CPW|1|0|U|1972
3CPW|1|0|A|1973
3CPW|1|0|G|1974
*
3CPW|1|0|U|2008
3CPW|1|0|G|2009
3CPW|1|0|A|2010
3CPW|1|0|A|2011
3CPW|1|0|U|2012
3CPW|1|0|G|2013

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P