J4_3CXC_001

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

3CXC|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CXC_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0366

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

3CXC|1|0|C|239
3CXC|1|0|C|240
*
3CXC|1|0|G|379
3CXC|1|0|A|380
3CXC|1|0|G|381
3CXC|1|0|U|382
3CXC|1|0|A|383
3CXC|1|0|G|384
*
3CXC|1|0|C|405
3CXC|1|0|G|406
3CXC|1|0|A|407
3CXC|1|0|A|408
3CXC|1|0|U|409
3CXC|1|0|A|410
3CXC|1|0|A|411
3CXC|1|0|C|412
*
3CXC|1|0|G|428
3CXC|1|0|A|429
3CXC|1|0|A|430
3CXC|1|0|G|431

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN L15E