J4_3CXC_008

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3CXC|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CXC_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0444

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

3CXC|1|0|C|1889
3CXC|1|0|U|1890
3CXC|1|0|G|1891
*
3CXC|1|0|C|1946
3CXC|1|0|G|1947
*
3CXC|1|0|C|1965
3CXC|1|0|U|1966
3CXC|1|0|U|1967
3CXC|1|0|A|1968
3CXC|1|0|A|1969
3CXC|1|0|G|1970
3CXC|1|0|G|1971
3CXC|1|0|U|1972
3CXC|1|0|A|1973
3CXC|1|0|G|1974
*
3CXC|1|0|U|2008
3CXC|1|0|G|2009
3CXC|1|0|A|2010
3CXC|1|0|A|2011
3CXC|1|0|U|2012
3CXC|1|0|G|2013

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain Y

RIBOSOMAL PROTEIN L37AE