J4_3DEG_001
3D structure
- PDB id
- 3DEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10.9 Å
Loop
- Sequence
- UUA(2MG)*C(M2G)C*GAG(7MG)UC(5MC)*GA
- Length
- 16 nucleotides
- Bulged bases
- 3DEG|1|A|U|8, 3DEG|1|A|U|47, 3DEG|1|A|C|48
- QA status
- Modified nucleotides: 2MG, M2G, 7MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3DEG_001 not in the Motif Atlas
- Homologous match to J4_5AXM_001
- Geometric discrepancy: 0.1395
- The information below is about J4_5AXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.27
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 53
Unit IDs
3DEG|1|A|U|7
3DEG|1|A|U|8
3DEG|1|A|A|9
3DEG|1|A|2MG|10
*
3DEG|1|A|C|25
3DEG|1|A|M2G|26
3DEG|1|A|C|27
*
3DEG|1|A|G|43
3DEG|1|A|A|44
3DEG|1|A|G|45
3DEG|1|A|7MG|46
3DEG|1|A|U|47
3DEG|1|A|C|48
3DEG|1|A|5MC|49
*
3DEG|1|A|G|65
3DEG|1|A|A|66
Current chains
- Chain A
- A/L-tRNA
Nearby chains
- Chain C
- GTP-binding protein lepA
Coloring options: