J4_3G4S_001

3D structure

PDB id

3G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Tiamulin bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

3G4S|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3G4S_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0582

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

3G4S|1|0|C|239
3G4S|1|0|C|240
*
3G4S|1|0|G|379
3G4S|1|0|A|380
3G4S|1|0|G|381
3G4S|1|0|U|382
3G4S|1|0|A|383
3G4S|1|0|G|384
*
3G4S|1|0|C|405
3G4S|1|0|G|406
3G4S|1|0|A|407
3G4S|1|0|A|408
3G4S|1|0|U|409
3G4S|1|0|A|410
3G4S|1|0|A|411
3G4S|1|0|C|412
*
3G4S|1|0|G|428
3G4S|1|0|A|429
3G4S|1|0|A|430
3G4S|1|0|G|431

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e