J4_3G4S_007

3D structure

PDB id

3G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Tiamulin bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3G4S|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3G4S_007 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0917

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3G4S|1|0|C|1889
3G4S|1|0|U|1890
3G4S|1|0|G|1891
*
3G4S|1|0|C|1946
3G4S|1|0|G|1947
*
3G4S|1|0|C|1965
3G4S|1|0|U|1966
3G4S|1|0|U|1967
3G4S|1|0|A|1968
3G4S|1|0|A|1969
3G4S|1|0|G|1970
3G4S|1|0|G|1971
3G4S|1|0|U|1972
3G4S|1|0|A|1973
3G4S|1|0|G|1974
*
3G4S|1|0|U|2008
3G4S|1|0|G|2009
3G4S|1|0|A|2010
3G4S|1|0|A|2011
3G4S|1|0|U|2012
3G4S|1|0|G|2013

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P