J4_3G6E_001

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

3G6E|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3G6E_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0293

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

3G6E|1|0|C|239
3G6E|1|0|C|240
*
3G6E|1|0|G|379
3G6E|1|0|A|380
3G6E|1|0|G|381
3G6E|1|0|U|382
3G6E|1|0|A|383
3G6E|1|0|G|384
*
3G6E|1|0|C|405
3G6E|1|0|G|406
3G6E|1|0|A|407
3G6E|1|0|A|408
3G6E|1|0|U|409
3G6E|1|0|A|410
3G6E|1|0|A|411
3G6E|1|0|C|412
*
3G6E|1|0|G|428
3G6E|1|0|A|429
3G6E|1|0|A|430
3G6E|1|0|G|431

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e