J4_3G6E_008

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3G6E|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3G6E_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.041

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

3G6E|1|0|C|1889
3G6E|1|0|U|1890
3G6E|1|0|G|1891
*
3G6E|1|0|C|1946
3G6E|1|0|G|1947
*
3G6E|1|0|C|1965
3G6E|1|0|U|1966
3G6E|1|0|U|1967
3G6E|1|0|A|1968
3G6E|1|0|A|1969
3G6E|1|0|G|1970
3G6E|1|0|G|1971
3G6E|1|0|U|1972
3G6E|1|0|A|1973
3G6E|1|0|G|1974
*
3G6E|1|0|U|2008
3G6E|1|0|G|2009
3G6E|1|0|A|2010
3G6E|1|0|A|2011
3G6E|1|0|U|2012
3G6E|1|0|G|2013

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P