J4_3I55_001

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

3I55|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3I55_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0484

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

3I55|1|0|C|239
3I55|1|0|C|240
*
3I55|1|0|G|379
3I55|1|0|A|380
3I55|1|0|G|381
3I55|1|0|U|382
3I55|1|0|A|383
3I55|1|0|G|384
*
3I55|1|0|C|405
3I55|1|0|G|406
3I55|1|0|A|407
3I55|1|0|A|408
3I55|1|0|U|409
3I55|1|0|A|410
3I55|1|0|A|411
3I55|1|0|C|412
*
3I55|1|0|G|428
3I55|1|0|A|429
3I55|1|0|A|430
3I55|1|0|G|431

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e