J4_3ICQ_001

3D structure

PDB id

3ICQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Karyopherin nuclear state

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUAAC*GCGC*GAGGUCC*GA

Length

18 nucleotides

Bulged bases

3ICQ|1|E|U|8, 3ICQ|1|E|U|47, 3ICQ|1|E|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_78156.1

Basepair signature

cWW-F-cWW-F-cWW-F-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3ICQ|1|E|U|7
3ICQ|1|E|U|8
3ICQ|1|E|A|9
3ICQ|1|E|A|10
3ICQ|1|E|C|11
*
3ICQ|1|E|G|24
3ICQ|1|E|C|25
3ICQ|1|E|G|26
3ICQ|1|E|C|27
*
3ICQ|1|E|G|43
3ICQ|1|E|A|44
3ICQ|1|E|G|45
3ICQ|1|E|G|46
3ICQ|1|E|U|47
3ICQ|1|E|C|48
3ICQ|1|E|C|49
*
3ICQ|1|E|G|65
3ICQ|1|E|A|66

Current chains

Chain E

RNA (62-MER)

Nearby chains

Chain C

GTP-binding nuclear protein GSP1/CNR1

Chain U

Exportin-T