J4_3J28_003

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

3J28|1|N|C|576, 3J28|1|N|A|815, 3J28|1|N|C|817, 3J28|1|N|A|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J28_003 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.4188

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

3J28|1|N|G|575
3J28|1|N|C|576
3J28|1|N|G|577
*
3J28|1|N|C|764
3J28|1|N|G|765
3J28|1|N|A|766
3J28|1|N|A|767
3J28|1|N|A|768
3J28|1|N|G|769
*
3J28|1|N|C|810
3J28|1|N|C|811
3J28|1|N|G|812
3J28|1|N|U|813
3J28|1|N|A|814
3J28|1|N|A|815
3J28|1|N|A|816
3J28|1|N|C|817
3J28|1|N|G|818
3J28|1|N|A|819
3J28|1|N|U|820
3J28|1|N|G|821
*
3J28|1|N|C|879
3J28|1|N|C|880

Current chains

Chain N

16S rRNA

Nearby chains