J4_3J29_003

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

3J29|1|N|C|576, 3J29|1|N|A|815, 3J29|1|N|C|817, 3J29|1|N|G|818, 3J29|1|N|A|819, 3J29|1|N|U|820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J29_003 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.4238

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

3J29|1|N|G|575
3J29|1|N|C|576
3J29|1|N|G|577
*
3J29|1|N|C|764
3J29|1|N|G|765
3J29|1|N|A|766
3J29|1|N|A|767
3J29|1|N|A|768
3J29|1|N|G|769
*
3J29|1|N|C|810
3J29|1|N|C|811
3J29|1|N|G|812
3J29|1|N|U|813
3J29|1|N|A|814
3J29|1|N|A|815
3J29|1|N|A|816
3J29|1|N|C|817
3J29|1|N|G|818
3J29|1|N|A|819
3J29|1|N|U|820
3J29|1|N|G|821
*
3J29|1|N|C|879
3J29|1|N|C|880

Current chains

Chain N

16S rRNA

Nearby chains