J4_3J2C_005

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

3J2C|1|N|C|576, 3J2C|1|N|A|815, 3J2C|1|N|C|817, 3J2C|1|N|A|819

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J2C_005 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.4183

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

3J2C|1|N|G|575
3J2C|1|N|C|576
3J2C|1|N|G|577
*
3J2C|1|N|C|764
3J2C|1|N|G|765
3J2C|1|N|A|766
3J2C|1|N|A|767
3J2C|1|N|A|768
3J2C|1|N|G|769
*
3J2C|1|N|C|810
3J2C|1|N|C|811
3J2C|1|N|G|812
3J2C|1|N|U|813
3J2C|1|N|A|814
3J2C|1|N|A|815
3J2C|1|N|A|816
3J2C|1|N|C|817
3J2C|1|N|G|818
3J2C|1|N|A|819
3J2C|1|N|U|820
3J2C|1|N|G|821
*
3J2C|1|N|C|879
3J2C|1|N|C|880

Current chains

Chain N

16S rRNA body domain

Nearby chains

Chain O

Small subunit ribosomal RNA fragment; SSU rRNA fragment