J4_3J2F_004

3D structure

PDB id

3J2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

17.6 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

3J2F|1|N|C|576, 3J2F|1|N|G|818, 3J2F|1|N|A|819, 3J2F|1|N|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J2F_004 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.5347

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

3J2F|1|N|G|575
3J2F|1|N|C|576
3J2F|1|N|G|577
*
3J2F|1|N|C|764
3J2F|1|N|G|765
3J2F|1|N|A|766
3J2F|1|N|A|767
3J2F|1|N|A|768
3J2F|1|N|G|769
*
3J2F|1|N|C|810
3J2F|1|N|C|811
3J2F|1|N|G|812
3J2F|1|N|U|813
3J2F|1|N|A|814
3J2F|1|N|A|815
3J2F|1|N|A|816
3J2F|1|N|C|817
3J2F|1|N|G|818
3J2F|1|N|A|819
3J2F|1|N|U|820
3J2F|1|N|G|821
*
3J2F|1|N|C|879
3J2F|1|N|C|880

Current chains

Chain N

16S rRNA

Nearby chains