3D structure

PDB id
3J2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
17.6 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
3J2F|1|N|C|576, 3J2F|1|N|G|818, 3J2F|1|N|A|819, 3J2F|1|N|U|820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_3J2F_004 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.5347
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

3J2F|1|N|G|575
3J2F|1|N|C|576
3J2F|1|N|G|577
*
3J2F|1|N|C|764
3J2F|1|N|G|765
3J2F|1|N|A|766
3J2F|1|N|A|767
3J2F|1|N|A|768
3J2F|1|N|G|769
*
3J2F|1|N|C|810
3J2F|1|N|C|811
3J2F|1|N|G|812
3J2F|1|N|U|813
3J2F|1|N|A|814
3J2F|1|N|A|815
3J2F|1|N|A|816
3J2F|1|N|C|817
3J2F|1|N|G|818
3J2F|1|N|A|819
3J2F|1|N|U|820
3J2F|1|N|G|821
*
3J2F|1|N|C|879
3J2F|1|N|C|880

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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