J4_3J46_001

3D structure

PDB id

3J46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SecY protein translocation channel in action

Experimental method

ELECTRON MICROSCOPY

Resolution

10.1 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

3J46|1|a|U|8, 3J46|1|a|U|47, 3J46|1|a|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J46_001 not in the Motif Atlas

Homologous match to J4_5E81_030

Geometric discrepancy: 0.4021

The information below is about J4_5E81_030

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

3J46|1|a|A|7
3J46|1|a|U|8
3J46|1|a|A|9
3J46|1|a|G|10
*
3J46|1|a|C|25
3J46|1|a|A|26
3J46|1|a|G|27
*
3J46|1|a|C|43
3J46|1|a|G|44
3J46|1|a|U|45
3J46|1|a|G|46
3J46|1|a|U|47
3J46|1|a|C|48
3J46|1|a|C|49
*
3J46|1|a|G|65
3J46|1|a|U|66

Current chains

Chain a

A-tRNA

Nearby chains