J4_3J5L_001

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

3J5L|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J5L_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0652

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

3J5L|1|A|C|268
3J5L|1|A|C|269
*
3J5L|1|A|G|370
3J5L|1|A|A|371
3J5L|1|A|G|372
3J5L|1|A|U|373
3J5L|1|A|A|374
3J5L|1|A|G|375
*
3J5L|1|A|U|399
3J5L|1|A|G|400
3J5L|1|A|A|401
3J5L|1|A|A|402
3J5L|1|A|U|403
3J5L|1|A|A|404
3J5L|1|A|U|405
3J5L|1|A|G|406
*
3J5L|1|A|C|421
3J5L|1|A|A|422
3J5L|1|A|A|423
3J5L|1|A|G|424

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28