J4_3J5L_006

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

3J5L|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J5L_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0597

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J5L|1|A|U|1313
3J5L|1|A|C|1314
*
3J5L|1|A|G|1338
3J5L|1|A|G|1339
3J5L|1|A|U|1340
3J5L|1|A|G|1341
3J5L|1|A|A|1342
3J5L|1|A|G|1343
*
3J5L|1|A|C|1404
3J5L|1|A|U|1405
*
3J5L|1|A|A|1597
3J5L|1|A|A|1598
3J5L|1|A|U|1599
3J5L|1|A|C|1600
3J5L|1|A|G|1601
3J5L|1|A|U|1602
3J5L|1|A|A|1603

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23