Motif J4_10313.5 Version J4_10313.5 of this group appears in releases 3.91 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-3 | 6-15 | 7-8 | 9-10 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_7A0S_006 | 7A0S | 0.1656 | 1 | X | LSU rRNA | U | 1326 | C | 1327 | * | G | 1351 | G | 1352 | A | 1353 | A | 1355 | G | 1356 | * | C | 1417 | C | 1418 | * | G | 1613 | C | 1614 | C | 1615 | C | 1616 | G | 1617 | U | 1618 | A | 1619 | cWW | cWW | ntHW | cWW | cWW |
| 2 | J4_4WF9_006 | 4WF9 | 0.1391 | 1 | X | LSU rRNA | U | 1350 | C | 1351 | * | G | 1375 | G | 1376 | U | 1377 | A | 1379 | G | 1380 | * | C | 1441 | C | 1442 | * | G | 1641 | C | 1642 | C | 1643 | C | 1644 | G | 1645 | U | 1646 | A | 1647 | cWW | cWW | tHW | cWW | cWW |
| 3 | J4_9DFE_005 | 9DFE | 0.0000 | 1 | 1A | LSU rRNA | U | 1313 | C | 1314 | * | G | 1338 | G | 1339 | U | 1340 | A | 1342 | G | 1343 | * | C | 1404 | U | 1405 | * | A | 1597 | C | 1598 | C | 1599 | C | 1600 | G | 1601 | U | 1602 | A | 1603 | cWW | cWW | tHW | cWW | cWW |
| 4 | J4_4V9F_005 | 4V9F | 0.1576 | 1 | 0 | LSU rRNA | U | 1419 | C | 1420 | * | G | 1444 | G | 1445 | U | 1446 | A | 1448 | G | 1449 | * | C | 1513 | C | 1514 | * | G | 1672 | U | 1673 | C | 1674 | C | 1675 | G | 1676 | U | 1677 | A | 1678 | cWW | cWW | tHW | cWW | cWW |
| 5 | J4_5J7L_023 | 5J7L | 0.1696 | 1 | DA | LSU rRNA | U | 1313 | C | 1314 | * | G | 1338 | G | 1339 | U | 1340 | A | 1342 | G | 1343 | * | C | 1404 | U | 1405 | * | A | 1597 | A | 1598 | U | 1599 | C | 1600 | G | 1601 | U | 1602 | A | 1603 | cWW | cWW | tHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UC*GGAAAG*CC*GCCCGUA | 1 |
| UC*GGUUAG*CC*GCCCGUA | 1 |
| UC*GGUUAG*CU*ACCCGUA | 1 |
| UC*GGUUAG*CC*GUCCGUA | 1 |
| UC*GGUGAG*CU*AAUCGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GUUA**CCCGU | 2 |
| *GAAA**CCCGU | 1 |
| *GUUA**UCCGU | 1 |
| *GUGA**AUCGU | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.14 | Max 0.25
Coloring options: