J4_3J5S_002

3D structure

PDB id

3J5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics

Experimental method

ELECTRON MICROSCOPY

Resolution

7.5 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

3J5S|1|E|U|8, 3J5S|1|E|U|48, 3J5S|1|E|C|49

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J5S_002 not in the Motif Atlas

Homologous match to J4_6UFG_001

Geometric discrepancy: 0.1826

The information below is about J4_6UFG_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

3J5S|1|E|G|7
3J5S|1|E|U|8
3J5S|1|E|G|9
3J5S|1|E|G|10
*
3J5S|1|E|C|26
3J5S|1|E|G|27
3J5S|1|E|U|28
*
3J5S|1|E|A|44
3J5S|1|E|A|45
3J5S|1|E|G|46
3J5S|1|E|G|47
3J5S|1|E|U|48
3J5S|1|E|C|49
3J5S|1|E|G|50
*
3J5S|1|E|C|66
3J5S|1|E|C|67

Current chains

Chain E

P-site tRNA FMet

Nearby chains