J4_3J6X_005

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAGAUGAAAAG*CG*CUCUUG

Length

39 nucleotides

Bulged bases

3J6X|1|2S|U|343, 3J6X|1|2S|A|351, 3J6X|1|8S|U|23

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6X|1|2S|C|340
3J6X|1|2S|G|341
3J6X|1|2S|A|342
3J6X|1|2S|U|343
3J6X|1|2S|A|344
3J6X|1|2S|G|345
3J6X|1|2S|C|346
3J6X|1|2S|G|347
3J6X|1|2S|A|348
3J6X|1|2S|A|349
3J6X|1|2S|C|350
3J6X|1|2S|A|351
3J6X|1|2S|A|352
3J6X|1|2S|G|353
3J6X|1|2S|U|354
3J6X|1|2S|A|355
3J6X|1|2S|C|356
*
3J6X|1|2S|G|363
3J6X|1|2S|G|364
3J6X|1|2S|A|365
3J6X|1|2S|A|366
3J6X|1|2S|A|367
3J6X|1|2S|G|368
3J6X|1|2S|A|369
3J6X|1|2S|U|370
3J6X|1|2S|G|371
3J6X|1|2S|A|372
3J6X|1|2S|A|373
3J6X|1|2S|A|374
3J6X|1|2S|A|375
3J6X|1|2S|G|376
*
3J6X|1|2S|C|403
3J6X|1|2S|G|404
*
3J6X|1|8S|C|19
3J6X|1|8S|U|20
3J6X|1|8S|C|21
3J6X|1|8S|U|22
3J6X|1|8S|U|23
3J6X|1|8S|G|24

Current chains

Chain 2S

25S ribosomal RNA

Chain 8S

5.8S ribosomal RNA

Nearby chains

Chain 57

60S ribosomal protein L17

Chain 66

60S ribosomal protein L26

Chain 77

60S ribosomal protein L37

Chain 79

60S ribosomal protein L39

Chain L4

60S ribosomal protein L4