J4_3J6Y_004

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J6Y_004 not in the Motif Atlas

Homologous match to J4_8C3A_002

Geometric discrepancy: 0.1913

The information below is about J4_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|2S|C|185
3J6Y|1|2S|U|186
3J6Y|1|2S|A|187
3J6Y|1|2S|U|188
3J6Y|1|2S|G|189
*
3J6Y|1|2S|C|205
3J6Y|1|2S|G|206
3J6Y|1|2S|U|207
3J6Y|1|2S|C|208
*
3J6Y|1|2S|G|212
3J6Y|1|2S|A|213
3J6Y|1|2S|G|214
*
3J6Y|1|2S|C|226
3J6Y|1|2S|G|227
3J6Y|1|2S|U|228
3J6Y|1|2S|G|229
3J6Y|1|2S|U|230
3J6Y|1|2S|G|231

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 66

60S ribosomal protein L26

Chain 8S

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4