J4_3J6Y_008
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J6Y_008 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1592
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
3J6Y|1|2S|G|2130
3J6Y|1|2S|A|2131
3J6Y|1|2S|C|2132
3J6Y|1|2S|U|2133
3J6Y|1|2S|G|2134
*
3J6Y|1|2S|C|2146
3J6Y|1|2S|A|2147
3J6Y|1|2S|U|2148
3J6Y|1|2S|A|2149
3J6Y|1|2S|G|2150
*
3J6Y|1|2S|U|2186
3J6Y|1|2S|G|2187
3J6Y|1|2S|A|2188
3J6Y|1|2S|U|2189
3J6Y|1|2S|U|2190
*
3J6Y|1|2S|A|2317
3J6Y|1|2S|U|2318
3J6Y|1|2S|U|2319
3J6Y|1|2S|A|2320
3J6Y|1|2S|A|2321
3J6Y|1|2S|C|2322
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 1S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 81
- 60S ribosomal protein L41
- Chain 83
- 60S ribosomal protein L43
- Chain L2
- 60S ribosomal protein L2
Coloring options: