J4_3J6Y_009
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 3J6Y|1|2S|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J6Y_009 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1975
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6Y|1|2S|C|2192
3J6Y|1|2S|U|2193
3J6Y|1|2S|G|2194
*
3J6Y|1|2S|C|2248
3J6Y|1|2S|G|2249
*
3J6Y|1|2S|C|2267
3J6Y|1|2S|U|2268
3J6Y|1|2S|U|2269
3J6Y|1|2S|A|2270
3J6Y|1|2S|A|2271
3J6Y|1|2S|G|2272
3J6Y|1|2S|G|2273
3J6Y|1|2S|U|2274
3J6Y|1|2S|A|2275
3J6Y|1|2S|G|2276
*
3J6Y|1|2S|U|2310
3J6Y|1|2S|G|2311
3J6Y|1|2S|A|2312
3J6Y|1|2S|A|2313
3J6Y|1|2S|U|2314
3J6Y|1|2S|G|2315
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 1S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 81
- 60S ribosomal protein L41
- Chain L2
- 60S ribosomal protein L2
Coloring options: