J4_3J6Y_010
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J6Y_010 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.2279
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6Y|1|2S|C|2654
3J6Y|1|2S|U|2655
3J6Y|1|2S|A|2656
3J6Y|1|2S|A|2657
3J6Y|1|2S|G|2658
*
3J6Y|1|2S|U|2712
3J6Y|1|2S|U|2713
3J6Y|1|2S|G|2714
3J6Y|1|2S|A|2715
3J6Y|1|2S|U|2716
*
3J6Y|1|2S|A|2740
3J6Y|1|2S|C|2741
3J6Y|1|2S|C|2742
*
3J6Y|1|2S|G|2751
3J6Y|1|2S|U|2752
3J6Y|1|2S|G|2753
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 61
- 60S ribosomal protein L21
- Chain 69
- 60S ribosomal protein L29
- Chain 82
- 60S ribosomal protein L42
- Chain L5
- 60S ribosomal protein L5
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