J4_3J6Y_012
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 3J6Y|1|2S|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J6Y_012 not in the Motif Atlas
- Homologous match to J4_8CRE_004
- Geometric discrepancy: 0.1809
- The information below is about J4_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J6Y|1|2S|G|1492
3J6Y|1|2S|G|1493
3J6Y|1|2S|U|1494
3J6Y|1|2S|U|1495
3J6Y|1|2S|C|1496
*
3J6Y|1|2S|G|1520
3J6Y|1|2S|G|1521
3J6Y|1|2S|U|1522
3J6Y|1|2S|U|1523
3J6Y|1|2S|A|1524
3J6Y|1|2S|G|1525
*
3J6Y|1|2S|C|1614
3J6Y|1|2S|C|1615
*
3J6Y|1|2S|G|1829
3J6Y|1|2S|G|1830
3J6Y|1|2S|U|1831
3J6Y|1|2S|C|1832
3J6Y|1|2S|G|1833
3J6Y|1|2S|U|1834
3J6Y|1|2S|A|1835
3J6Y|1|2S|C|1836
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 59
- 60S ribosomal protein L19
- Chain 65
- 60S ribosomal protein L25
- Chain 74
- 60S ribosomal protein L34
- Chain 77
- 60S ribosomal protein L37
- Chain 78
- 60S ribosomal protein L38
- Chain 79
- 60S ribosomal protein L39
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: