J4_3J73_001

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUCC*GGCCGGGCCAC*GAGGGGCCACGCGCGCGUC*GACGGCGGAGCGA

Length

48 nucleotides

Bulged bases

3J73|1|5|C|1237, 3J73|1|5|G|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J73|1|5|U|980
3J73|1|5|C|981
3J73|1|5|U|982
3J73|1|5|C|983
3J73|1|5|C|984
*
3J73|1|5|G|1069
3J73|1|5|G|1070
3J73|1|5|C|1071
3J73|1|5|C|1072
3J73|1|5|G|1073
3J73|1|5|G|1074
3J73|1|5|G|1075
3J73|1|5|C|1076
3J73|1|5|C|1077
3J73|1|5|A|1078
3J73|1|5|C|1079
*
3J73|1|5|G|1221
3J73|1|5|A|1222
3J73|1|5|G|1232
3J73|1|5|G|1233
3J73|1|5|G|1234
3J73|1|5|G|1235
3J73|1|5|C|1236
3J73|1|5|C|1237
3J73|1|5|A|1238
3J73|1|5|C|1239
3J73|1|5|G|1240
3J73|1|5|C|1241
3J73|1|5|G|1242
3J73|1|5|C|1243
3J73|1|5|G|1244
3J73|1|5|C|1245
3J73|1|5|G|1246
3J73|1|5|U|1247
3J73|1|5|C|1248
*
3J73|1|5|G|1262
3J73|1|5|A|1263
3J73|1|5|C|1264
3J73|1|5|G|1265
3J73|1|5|G|1266
3J73|1|5|C|1267
3J73|1|5|G|1268
3J73|1|5|G|1269
3J73|1|5|A|1270
3J73|1|5|G|1271
3J73|1|5|C|1272
3J73|1|5|G|1273
3J73|1|5|A|1274

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain E

Ribosomal protein eL6

Chain F

Ribosomal protein uL30