J4_3J77_006

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAGAUGAAAAGAAC*GAGUGAAAAAGUACGUGAAAU*ACGGAUCUCUUG

Length

67 nucleotides

Bulged bases

3J77|1|2S|U|343, 3J77|1|2S|A|351, 3J77|1|2S|A|398, 3J77|1|2S|A|402, 3J77|1|8S|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J77|1|2S|C|340
3J77|1|2S|G|341
3J77|1|2S|A|342
3J77|1|2S|U|343
3J77|1|2S|A|344
3J77|1|2S|G|345
3J77|1|2S|C|346
3J77|1|2S|G|347
3J77|1|2S|A|348
3J77|1|2S|A|349
3J77|1|2S|C|350
3J77|1|2S|A|351
3J77|1|2S|A|352
3J77|1|2S|G|353
3J77|1|2S|U|354
3J77|1|2S|A|355
3J77|1|2S|C|356
*
3J77|1|2S|G|363
3J77|1|2S|G|364
3J77|1|2S|A|365
3J77|1|2S|A|366
3J77|1|2S|A|367
3J77|1|2S|G|368
3J77|1|2S|A|369
3J77|1|2S|U|370
3J77|1|2S|G|371
3J77|1|2S|A|372
3J77|1|2S|A|373
3J77|1|2S|A|374
3J77|1|2S|A|375
3J77|1|2S|G|376
3J77|1|2S|A|377
3J77|1|2S|A|378
3J77|1|2S|C|379
*
3J77|1|2S|G|390
3J77|1|2S|A|391
3J77|1|2S|G|392
3J77|1|2S|U|393
3J77|1|2S|G|394
3J77|1|2S|A|395
3J77|1|2S|A|396
3J77|1|2S|A|397
3J77|1|2S|A|398
3J77|1|2S|A|399
3J77|1|2S|G|400
3J77|1|2S|U|401
3J77|1|2S|A|402
3J77|1|2S|C|403
3J77|1|2S|G|404
3J77|1|2S|U|405
3J77|1|2S|G|406
3J77|1|2S|A|407
3J77|1|2S|A|408
3J77|1|2S|A|409
3J77|1|2S|U|410
*
3J77|1|8S|A|13
3J77|1|8S|C|14
3J77|1|8S|G|15
3J77|1|8S|G|16
3J77|1|8S|A|17
3J77|1|8S|U|18
3J77|1|8S|C|19
3J77|1|8S|U|20
3J77|1|8S|C|21
3J77|1|8S|U|22
3J77|1|8S|U|23
3J77|1|8S|G|24

Current chains

Chain 2S

25S ribosomal RNA

Chain 8S

5.8S ribosomal RNA

Nearby chains

Chain 67

60S ribosomal protein L17

Chain 76

60S ribosomal protein L26

Chain 82

60S ribosomal protein L32

Chain 87

60S ribosomal protein L37

Chain 89

60S ribosomal protein L39

Chain L4

60S ribosomal protein L4