J4_3J77_010
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 3J77|1|2S|U|2314
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J77_010 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.2909
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
3J77|1|2S|C|2192
3J77|1|2S|U|2193
3J77|1|2S|G|2194
*
3J77|1|2S|C|2248
3J77|1|2S|G|2249
*
3J77|1|2S|C|2267
3J77|1|2S|U|2268
3J77|1|2S|U|2269
3J77|1|2S|A|2270
3J77|1|2S|A|2271
3J77|1|2S|G|2272
3J77|1|2S|G|2273
3J77|1|2S|U|2274
3J77|1|2S|A|2275
3J77|1|2S|G|2276
*
3J77|1|2S|U|2310
3J77|1|2S|G|2311
3J77|1|2S|A|2312
3J77|1|2S|A|2313
3J77|1|2S|U|2314
3J77|1|2S|G|2315
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 1S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 91
- 60S ribosomal protein L41
- Chain L2
- 60S ribosomal protein L2
- Chain PT
- Transfer RNA; tRNA
Coloring options: