J4_3J78_006

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J78_006 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.2335

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3J78|1|2S|G|1674
3J78|1|2S|G|1675
*
3J78|1|2S|C|1693
3J78|1|2S|U|1694
*
3J78|1|2S|A|1752
3J78|1|2S|G|1753
*
3J78|1|2S|U|1772
3J78|1|2S|C|1773

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 69

60S ribosomal protein L19

Chain 72

60S ribosomal protein L22

Chain 84

60S ribosomal protein L34

Chain 88

60S ribosomal protein L38