J4_3J78_013
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 3J78|1|2S|A|1452, 3J78|1|2S|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J78_013 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.1777
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J78|1|2S|C|1451
3J78|1|2S|A|1452
3J78|1|2S|A|1453
3J78|1|2S|A|1454
3J78|1|2S|U|1455
3J78|1|2S|A|1456
3J78|1|2S|U|1457
*
3J78|1|2S|A|1475
3J78|1|2S|G|1476
*
3J78|1|2S|U|1877
3J78|1|2S|G|1878
3J78|1|2S|A|1879
3J78|1|2S|U|1880
*
3J78|1|2S|A|2352
3J78|1|2S|G|2353
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 67
- 60S ribosomal protein L17
- Chain 69
- 60S ribosomal protein L19
- Chain 81
- 60S ribosomal protein L31
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