J4_3J79_007
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 3J79|1|A|U|2607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J79_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1031
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J79|1|A|C|2485
3J79|1|A|U|2486
3J79|1|A|G|2487
*
3J79|1|A|C|2541
3J79|1|A|G|2542
*
3J79|1|A|C|2560
3J79|1|A|U|2561
3J79|1|A|U|2562
3J79|1|A|A|2563
3J79|1|A|A|2564
3J79|1|A|G|2565
3J79|1|A|G|2566
3J79|1|A|U|2567
3J79|1|A|A|2568
3J79|1|A|G|2569
*
3J79|1|A|U|2603
3J79|1|A|G|2604
3J79|1|A|A|2605
3J79|1|A|A|2606
3J79|1|A|U|2607
3J79|1|A|G|2608
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein uL2
- Chain g
- 60S ribosomal protein eL41
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