J4_3J79_008
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAAG*UUGAU*AAC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 3J79|1|A|A|2996
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J79_008 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.0999
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J79|1|A|C|2993
3J79|1|A|A|2994
3J79|1|A|A|2995
3J79|1|A|A|2996
3J79|1|A|G|2997
*
3J79|1|A|U|3051
3J79|1|A|U|3052
3J79|1|A|G|3053
3J79|1|A|A|3054
3J79|1|A|U|3055
*
3J79|1|A|A|3079
3J79|1|A|A|3080
3J79|1|A|C|3081
*
3J79|1|A|G|3090
3J79|1|A|U|3091
3J79|1|A|G|3092
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 4
- 60S ribosomal protein eL29
- Chain V
- 60S ribosomal protein eL21
- Chain i
- 60S ribosomal protein eL44
Coloring options: