J4_3J79_011
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAA*UC*GUU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J79_011 not in the Motif Atlas
- Homologous match to J4_8CRE_009
- Geometric discrepancy: 0.189
- The information below is about J4_8CRE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_65356.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J79|1|A|U|3396
3J79|1|A|A|3397
3J79|1|A|A|3398
*
3J79|1|A|U|3428
3J79|1|A|C|3429
*
3J79|1|A|G|3482
3J79|1|A|U|3483
3J79|1|A|U|3484
*
3J79|1|A|A|3519
3J79|1|A|U|3520
3J79|1|A|G|3521
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein uL3
- Chain K
- 60S ribosomal protein uL13
- Chain M
- 60S ribosomal protein uL14
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