J4_3J7A_002
3D structure
- PDB id
- 3J7A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 3J7A|1|A|C|630, 3J7A|1|A|A|1095, 3J7A|1|A|U|1098, 3J7A|1|A|U|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J7A_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0942
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J7A|1|A|A|629
3J7A|1|A|C|630
3J7A|1|A|G|631
*
3J7A|1|A|C|1044
3J7A|1|A|G|1045
3J7A|1|A|A|1046
3J7A|1|A|A|1047
3J7A|1|A|A|1048
3J7A|1|A|G|1049
*
3J7A|1|A|C|1090
3J7A|1|A|C|1091
3J7A|1|A|A|1092
3J7A|1|A|U|1093
3J7A|1|A|A|1094
3J7A|1|A|A|1095
3J7A|1|A|A|1096
3J7A|1|A|C|1097
3J7A|1|A|U|1098
3J7A|1|A|A|1099
3J7A|1|A|U|1100
3J7A|1|A|G|1101
*
3J7A|1|A|U|1204
3J7A|1|A|U|1205
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein eS26
- Chain K
- 40S ribosomal protein uS8
- Chain P
- 40S ribosomal protein uS11
- Chain Q
- 40S ribosomal protein uS12
- Chain U
- 40S ribosomal protein uS15
- Chain V
- 40S ribosomal protein uS17
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