J4_8P9A_022
3D structure
- PDB id
- 8P9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Methyllissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8P9A|1|sR|A|623, 8P9A|1|sR|A|1026, 8P9A|1|sR|U|1029, 8P9A|1|sR|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
8P9A|1|sR|A|622
8P9A|1|sR|A|623
8P9A|1|sR|G|624
*
8P9A|1|sR|C|975
8P9A|1|sR|G|976
8P9A|1|sR|A|977
8P9A|1|sR|A|978
8P9A|1|sR|A|979
8P9A|1|sR|G|980
*
8P9A|1|sR|C|1021
8P9A|1|sR|C|1022
8P9A|1|sR|A|1023
8P9A|1|sR|U|1024
8P9A|1|sR|A|1025
8P9A|1|sR|A|1026
8P9A|1|sR|A|1027
8P9A|1|sR|C|1028
8P9A|1|sR|U|1029
8P9A|1|sR|A|1030
8P9A|1|sR|U|1031
8P9A|1|sR|G|1032
*
8P9A|1|sR|U|1103
8P9A|1|sR|U|1104
Current chains
- Chain sR
- 16S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain DP
- Large ribosomal subunit protein eL41B
- Chain c1
- 40S ribosomal protein S11-A
- Chain c3
- 40S ribosomal protein S13
- Chain c4
- 40S ribosomal protein S14-B
- Chain d2
- 40S ribosomal protein S22-A
- Chain d3
- 40S ribosomal protein S23-A
- Chain d6
- Small ribosomal subunit protein eS26B
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