3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGUUC*GGUCAG*UC*GGCCGUAC
Length
21 nucleotides
Bulged bases
3J7P|1|5|C|2437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_3J7P_009 not in the Motif Atlas
Homologous match to J4_8CRE_004
Geometric discrepancy: 0.1451
The information below is about J4_8CRE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

3J7P|1|5|G|2406
3J7P|1|5|G|2407
3J7P|1|5|U|2408
3J7P|1|5|U|2409
3J7P|1|5|C|2410
*
3J7P|1|5|G|2434
3J7P|1|5|G|2435
3J7P|1|5|U|2436
3J7P|1|5|C|2437
3J7P|1|5|A|2438
3J7P|1|5|G|2439
*
3J7P|1|5|U|2538
3J7P|1|5|C|2539
*
3J7P|1|5|G|2777
3J7P|1|5|G|2778
3J7P|1|5|C|2779
3J7P|1|5|C|2780
3J7P|1|5|G|2781
3J7P|1|5|U|2782
3J7P|1|5|A|2783
3J7P|1|5|C|2784

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain R
Ribosomal protein eL19
Chain X
Ribosomal protein uL23
Chain g
Ribosomal protein eL34
Chain h
Ribosomal protein uL29
Chain j
Ribosomal protein eL37
Chain k
Ribosomal protein eL38
Chain l
Ribosomal protein eL39

Coloring options:


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