J4_3J7P_009
3D structure
- PDB id
- 3J7P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 3J7P|1|5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J7P_009 not in the Motif Atlas
- Homologous match to J4_8CRE_004
- Geometric discrepancy: 0.1451
- The information below is about J4_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J7P|1|5|G|2406
3J7P|1|5|G|2407
3J7P|1|5|U|2408
3J7P|1|5|U|2409
3J7P|1|5|C|2410
*
3J7P|1|5|G|2434
3J7P|1|5|G|2435
3J7P|1|5|U|2436
3J7P|1|5|C|2437
3J7P|1|5|A|2438
3J7P|1|5|G|2439
*
3J7P|1|5|U|2538
3J7P|1|5|C|2539
*
3J7P|1|5|G|2777
3J7P|1|5|G|2778
3J7P|1|5|C|2779
3J7P|1|5|C|2780
3J7P|1|5|G|2781
3J7P|1|5|U|2782
3J7P|1|5|A|2783
3J7P|1|5|C|2784
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- Ribosomal protein eL19
- Chain X
- Ribosomal protein uL23
- Chain g
- Ribosomal protein eL34
- Chain h
- Ribosomal protein uL29
- Chain j
- Ribosomal protein eL37
- Chain k
- Ribosomal protein eL38
- Chain l
- Ribosomal protein eL39
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