J4_3J8G_002

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J8G_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1872

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

3J8G|1|B|G|297
3J8G|1|B|G|298
3J8G|1|B|A|299
3J8G|1|B|A|300
3J8G|1|B|G|301
*
3J8G|1|B|C|316
3J8G|1|B|G|317
3J8G|1|B|C|318
3J8G|1|B|G|319
*
3J8G|1|B|C|323
3J8G|1|B|A|324
3J8G|1|B|G|325
*
3J8G|1|B|C|337
3J8G|1|B|G|338
3J8G|1|B|U|339
3J8G|1|B|A|340
3J8G|1|B|C|341

Current chains

Chain B

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24