J4_3J9M_004

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3J9M|1|A|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9M_004 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1372

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3J9M|1|A|C|2544
3J9M|1|A|U|2545
3J9M|1|A|G|2546
*
3J9M|1|A|C|2569
3J9M|1|A|C|2570
*
3J9M|1|A|G|2587
3J9M|1|A|C|2588
3J9M|1|A|A|2589
3J9M|1|A|A|2590
3J9M|1|A|A|2591
3J9M|1|A|G|2592
3J9M|1|A|G|2593
3J9M|1|A|U|2594
3J9M|1|A|A|2595
3J9M|1|A|G|2596
*
3J9M|1|A|U|2630
3J9M|1|A|G|2631
3J9M|1|A|A|2632
3J9M|1|A|A|2633
3J9M|1|A|U|2634
3J9M|1|A|G|2635

Current chains

Chain A

16S rRNA

Nearby chains

Chain A3

mS38

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

uL2m