J4_3J9M_007

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAG*CAAUAG*CCCUAAACCUCA*UC

Length

23 nucleotides

Bulged bases

3J9M|1|AA|A|942, 3J9M|1|AA|A|1103, 3J9M|1|AA|C|1106, 3J9M|1|AA|C|1108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9M_007 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.2227

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

3J9M|1|AA|G|941
3J9M|1|AA|A|942
3J9M|1|AA|G|943
*
3J9M|1|AA|C|1052
3J9M|1|AA|A|1053
3J9M|1|AA|A|1054
3J9M|1|AA|U|1055
3J9M|1|AA|A|1056
3J9M|1|AA|G|1057
*
3J9M|1|AA|C|1098
3J9M|1|AA|C|1099
3J9M|1|AA|C|1100
3J9M|1|AA|U|1101
3J9M|1|AA|A|1102
3J9M|1|AA|A|1103
3J9M|1|AA|A|1104
3J9M|1|AA|C|1105
3J9M|1|AA|C|1106
3J9M|1|AA|U|1107
3J9M|1|AA|C|1108
3J9M|1|AA|A|1109
*
3J9M|1|AA|U|1132
3J9M|1|AA|C|1133

Current chains

Chain AA

12S rRNA

Nearby chains

Chain A2

mS37

Chain A3

mS38

Chain AJ

uS12m

Chain AL

uS15m

Chain AN

uS17m

Chain AQ

bS21m

Chain AT

mS25