J4_3J9W_004

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAG*UGC*GAGGUCG*UC

Length

16 nucleotides

Bulged bases

3J9W|1|AX|U|8, 3J9W|1|AX|U|47, 3J9W|1|AX|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9W_004 not in the Motif Atlas

Homologous match to J4_5E81_027

Geometric discrepancy: 0.1364

The information below is about J4_5E81_027

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

3J9W|1|AX|G|7
3J9W|1|AX|U|8
3J9W|1|AX|A|9
3J9W|1|AX|G|10
*
3J9W|1|AX|U|25
3J9W|1|AX|G|26
3J9W|1|AX|C|27
*
3J9W|1|AX|G|43
3J9W|1|AX|A|44
3J9W|1|AX|G|45
3J9W|1|AX|G|46
3J9W|1|AX|U|47
3J9W|1|AX|C|48
3J9W|1|AX|G|49
*
3J9W|1|AX|U|65
3J9W|1|AX|C|66

Current chains

Chain AX

tRNA-Asp

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AM

30S ribosomal protein uS13

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BP

50S ribosomal protein uL16